rs36855101 SNP Detail

Summary

• ID
  rs36855101
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68490727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG TAATGTGTAT GAGTATGCCC
  K
  AGCGTGTGCC TGTGAACTTC TGTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542855	NES14685743	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	T	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36855101					SNP	G	G	G	G	T	G	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542855	NES14685743	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68490727 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1425 bp distal
Rr578031	regulatory region 578031	1611 bp distal
Rr578032	regulatory region 578032	706 bp distal
Rr578033	regulatory region 578033	295 bp proximal
Rr578034	regulatory region 578034	1648 bp proximal
Rr578035	regulatory region 578035	1949 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	738 bp upstream
Tssr29468	transcription start site region 29468	709 bp upstream
Tssr29469	transcription start site region 29469	760 bp upstream
Tssr29470	transcription start site region 29470	790 bp upstream
Tssr29471	transcription start site region 29471	818 bp upstream
Tssr29472	transcription start site region 29472	916 bp upstream
Tssr29473	transcription start site region 29473	942 bp upstream