rs36854042 SNP Detail

Summary

• ID
  rs36854042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34723540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATT CTAAGATCCT GTAAGTAATA
  Y
  GTGATTGTGT CCAGTCTCTC AGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss50776013	NES13546796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs36854042					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50776013	NES13546796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34723540 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	616 bp downstream
Rr546785	regulatory region 546785	28 bp proximal
Rr546786	regulatory region 546786	1139 bp proximal
Rr546787	regulatory region 546787	1932 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	Intron
Tssr156164	transcription start site region 156164	160 bp upstream
Tssr159005	transcription start site region 159005	960 bp downstream
Tssr159006	transcription start site region 159006	993 bp downstream
Tssr159007	transcription start site region 159007	1054 bp downstream
Tssr159008	transcription start site region 159008	1083 bp downstream
Tssr159009	transcription start site region 159009	1151 bp downstream
Tssr159010	transcription start site region 159010	1181 bp downstream
Tssr159011	transcription start site region 159011	1294 bp downstream
Tssr159012	transcription start site region 159012	1313 bp downstream
Tssr159013	transcription start site region 159013	1343 bp downstream