rs36853951 SNP Detail

Summary

• ID
  rs36853951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188712152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTAAATA TCAAGTCATC
  CAGGCAAGTA CACTTTTTTG CTTGCTTTAA CAAGGGGAAA AATTAACTTG CCATTTGTGA
  TAATTTTCGA AATGTCTGTG AATGCTAGGA ATGTAGAACT TTTATATAAA TATCATAGTT
  CCTATGTCAT ACAATACCAG TTTTGTATTT TAAAGCAAAC TTTAGAAAAA AACTTGGAAA
  W
  TACCAAGAAA TAGTTCCTGT GCACTTTTTA GCAGTATATA ATGAAATCCT CAGATCTCAG
  GCCAGTAGTG AAGTACAGGA GATACAGGTA AGGCATTTAG CCAGTCTTGT GGGAAATGGC
  CCTCTGGTTT CACTAAGCTT AGCAGGATGG AGAAGACAAA GAACTAAAGC CATCATGAAT
  GATTCAAGTG GTGATGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51420038	NES14449509	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36853951					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420038	NES14449509	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188712152 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			1480 bp distal
Rr425734	regulatory region 425734			34 bp proximal
Rr425735	regulatory region 425735			287 bp proximal
Tssr15705	transcription start site region 15705			1528 bp upstream