rs36853547 SNP Detail

Summary

• ID
  rs36853547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15188596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACACTT TAAAATGATA
  CTGTGAAAAA AGAAAACATG TGAACTGATA GCACCACACT GTGTGATGCT GTGTCGTGGT
  TCTATTTGTG GGGGAGTACT TATATCTTAC AGTTTTGTAG AAAGAAGGCC TCGCAGGTCT
  TTTTTTCTTT TTTGAAAACT TTCTCTGCAT TCAGATGGGT ATATTCCTCT TAAGGAACAA
  Y
  AAAATGTGAT GCTCACAACT GAGCTGATAT TAAACCCCAG TGGTTATCTG TTTTTGTAGA
  GGTTTAGACT TGGGTAATTT TCTTCTGGAA AGATTATTTT TCTTCTGACC AATTTCTCCT
  GTTATGTCCT AATTGGTTAC ATAAATCTTG TCTGGTATGA ATGAGAAATG TTTCTGTGTT
  GTCAAGTGTA ATCTTCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51242607	NES13801226	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C		C	C	C		C
ss321751559	CHEV_6_15138597	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36853547					SNP	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242607	NES13801226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15188596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			within coordinates
Rr626650	regulatory region 626650			1227 bp distal
Rr626651	regulatory region 626651			263 bp distal
Tssr54987	transcription start site region 54987			1753 bp downstream
Tssr54988	transcription start site region 54988			1701 bp downstream
Tssr54989	transcription start site region 54989			1684 bp downstream