rs36852099 SNP Detail

Summary

• ID
  rs36852099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57521347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAATAG GAGTGGGTGA
  GTTGGTGAGC AGGGGGAGGG GGAGGGAATA GGGGATTTTC GAAGGGGAAA ATAGAAAAGG
  GAATAACATT TGAAATGTAA ATAAAGAAAA TACCTAATAA AAAGTTTAAA AAATCTTTAC
  AGTCAAAAAA AGAAAGAAAG AAAAATATCC GACAATCTTA TGAAACACAA TAACACTAAT
  K
  CCATCTTAAT AAAAGAAAGT TGAATCCAAC TGAATACATA TAAATTAATA TTATCTGTGT
  ACACAGTTAA ACTGTAACTC TATGAAACTG AATCTAGTGA TGTTCACTGA ACAGGAGACT
  CACCATTGAG TCCACAACTG GCTGGACTCA AAGCATTTGT CCTTTTTATA AACATATCTA
  GTTGCCCAGA TGAATCTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss51315059	NES13763328	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs36852099					SNP	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315059	NES13763328	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57521347 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr631144	regulatory region 631144	474 bp distal
Rr631145	regulatory region 631145	282 bp proximal