rs36844701 SNP Detail

Summary

• ID
  rs36844701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151953334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTAGCT GAAATTCTAA
  ATCTGTGCGC CTCAAGTGAA ATTCACAATC TGACGTGAAA ATGTCCTACA GCCATATTAT
  TAAATACACT TTAACTTACA CAGAAAGAAA AAACCATGCA CTGAGTAATA CATTTATATT
  AACTTAGTAT ACAATATTAA AAGTTCAAAG CATATTGGAT AACATGCCCC AAAGTGAAAA
  Y
  GCAAAAAAAT ATTTACAAGT GAACTGTAAT ATACATACAG TTTCAAAACA TGCCTTTTAG
  GACTTGGTGT CAGTGGTAGA GCACCTGTTT AGTATGTACT AGGTCCGATG CATAGTACTA
  TGAAGATAGA ACAATGAAAT GAGGTAGCCC CATTTAGAGA GACCGCCTTG GATTGGCAGG
  AAGCATCAGT GGAGCACGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060304	NES13426159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36844701					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060304	NES13426159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151953334 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587499	regulatory region 587499	1992 bp distal
Rr587500	regulatory region 587500	1826 bp distal
Rr587501	regulatory region 587501	1534 bp distal
Rr587502	regulatory region 587502	1235 bp distal
Tssr36179	transcription start site region 36179	545 bp upstream
Tssr36180	transcription start site region 36180	500 bp upstream
Tssr36181	transcription start site region 36181	478 bp upstream
Tssr36182	transcription start site region 36182	461 bp upstream
Tssr36183	transcription start site region 36183	431 bp upstream
Tssr36184	transcription start site region 36184	259 bp downstream
Tssr36185	transcription start site region 36185	275 bp downstream
Tssr36186	transcription start site region 36186	383 bp downstream
Tssr36187	transcription start site region 36187	560 bp downstream
Tssr36188	transcription start site region 36188	628 bp downstream
Tssr36189	transcription start site region 36189	654 bp downstream
Tssr36190	transcription start site region 36190	732 bp downstream
Tssr36191	transcription start site region 36191	1981 bp downstream