rs36842014 SNP Detail

Summary

• ID
  rs36842014
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8102965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGGGG GCCCTGTGAT
  CCATCCAATA GTTGACTGTG GCCCAGCTTG TGCTTTTGTG AATGTCCCCA AACCACCCAA
  AGTCTAAGGA AAGCCTAGCC CTGATCTTTG TCCTTAGTTG CTGCTGGTTC CATGACAATA
  GGTCTCCCTC ACTGCAATGA GCCAATAACC TTTACCTAAC CTTAGGCAGA CTCCGATACT
  S
  CCTGATAAAG GACAGCAAAG CTACTTTTCT TAAATGATTC CCTTACTCTA GCCCCATTTA
  GAAGTAATAA TTTTGAGTGA GAACCCAGTA GTAAGTGGAT AGATACATAG AAAAACTAAC
  CTTATTATAG TCAATATGCT TTTATAAAAA TTTCTGAGAT CATAATATAA TTGCATCCTT
  TCTCCTTCTT TTTCATCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51554670	NES14866355	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36842014					SNP	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554670	NES14866355	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8102965 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
Rr626348	regulatory region 626348	1963 bp proximal