rs3684170 SNP Detail

Summary

• ID
  rs3684170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115810275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGATGC TCACTGTGTT
  CCTACCTGAT GAGCCAGAGG ACATTTTTGT TGTTGTTGCT GTTGTTGCTG TTGTTGTTGT
  TGTTCCTGCT CCATCCTGGC ATATTTGTTT GCAGCTTCTC TCTGCATAAT TATTGCTCCT
  CCATTCTGAA GAAGCCAACC CCAAGAAAAG AATCCAACAG CAGTACTGCT TCTGGTGACC
  R
  TTGAGAAATA GAGTCTTAGA AAATTCAGAT CTCCCTTTCT GTCTCAATAT ATCCATGTAT
  TTGTAACTCA CAGTTCCTTT ACTGTGTACT GTTTTCTTTC TCCCTTTACC TTATGTCCTC
  ATTTTTTAAA AATTACAATA ATGATCGCCC AGAAACCACT TCACTCAGAA GTTTAAACAT
  CCTCCCACCA TAACTCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5060220	WI_WGS_3_116352960	WI	MOUSE	f	SNP	G							A
ss45433919	mCV23906641	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss46917054	NES10678345	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	G	A	A	A
ss135668042	ENSMUSSNP3690461	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3684170					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917054	NES10678345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115810275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583640	regulatory region 583640			24 bp distal