rs36841306 SNP Detail

Summary

• ID
  rs36841306
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34424617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCCTGC AGGAGCACCC
  GGCTGTCCAG GACGGAGATA CTGTTGACTT GAAGCCCTTG AGGATTAGCC ATACCACTGA
  GAGCAAAGGG CTTTTGGATG CTTGCTGGCA GCCAAAAAAA AAAAAAAAAA AAAAAAAAGT
  GGTTCTTAAG TAGAAGATCC TTCAGGATGG CTGTGCAGAA AATGTATCAA AGCAGAGATA
  W
  GGCCACTTTC ATGGTTAGGT GTGATTGATT GGTTACAAAC AACCAACTGA GAACACCTGT
  CTTCTGCCAT CCCTTGGGTG TAGCTACTGG TTCACCTGTG TATGGAAACC AAGTTCTTCT
  TGTCCTTAGC CAATTGATCT ATCTCCTCGT AGTGTCGAGC CTTTGAGAGT TTTTTGTTTG
  GTTGGCTTGG TTTCTGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51273515	NES13780779	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36841306					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51273515	NES13780779	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34424617 () rs orientation: forward

Symbol	Name	Function Class
Rr628311	regulatory region 628311	373 bp proximal
Rr628312	regulatory region 628312	481 bp proximal