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rs36834099 SNP Detail
Summary
  • ID
    rs36834099
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:45386701 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTTTTAAA TCATATCACT
    TTTTCACTTT TAAGTGTAAA AATCTTTCTG AATTAAAAAA GTTTAATTTG AAAAGCAATA
    TCCTTGAAAA CATAGCTGAG GAGTTTGTTT AAAAACTATA CGTTCCTTCA GTTTGAAAAT
    CTTCATAGGA CTTCTATCTT AAAAGCTCAT TTGCATTTTT AAAAGGCTAT AAATGACGTT
    R
    CATGAACATA GGAGTGAAGG GAGACAGACT CTGTCATTCA ACGCATTCTC CTGAATGGGG
    GTGCAATATA AGAAACTCCT TTTGAGAAAT CCCCATGGGA GAGAGCGGGC AGGGGACTCC
    CCTGTGAAGT CAGGGTAGAA CAGCATCCAA GGTTTCCTTT CTGAGAAGCC CGTGTACACT
    GTTTTCTTGT TTCTGTTCTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51513052 NES14696153 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G A G G A A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36834099 SNP G G G G G G A G G A G G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51513052 NES14696153 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:45386701 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700027H10Rik RIKEN cDNA 1700027H10 gene within coordinates
Pcdh10 protocadherin 10 Intron
Noncoding-Transcript-Variant
Rr576058 regulatory region 576058 237 bp distal
Tssr29010 transcription start site region 29010 581 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory