rs36833245 SNP Detail

Summary

• ID
  rs36833245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGGC TTTTACTATT
  ACATATAAAT ACGTGTGCAT TTTACTTATT TTATGTGTAC AGATTTTTGT CTGTCTGTAT
  GTCTACACAC CAGCATAGGA TCCCTTGGCT GCTGGGAATT GAAGACCTGT CTTCGGGGAA
  GACTCAGTGC TAGTCCCCAC CTGAGTCTTT TATGGGAAAC AAAGGCCAGG ACTCCATCTG
  R
  CCCAGGCTCA TCTGGGATCT GAGGTCTGGG ATCAGGGAAG GGCTGACCTC CAGTAGGAGT
  CTTGACTCTT TCTGAGCTCT GACAGGTGAC ATGCGACTTC TTCCAACAGA TGGCAGGCTC
  TCCTGGGAAT GCCCAGGAGT GCACTAACAG GGCATCTGCA TCTTGTCTTA CTTCTGGGGA
  CCTGATCTAA CCCAGAGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749407	NES14799924	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36833245					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749407	NES14799924	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771849 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1283 bp upstream
Cpgi17670	CpG island 17670	994 bp distal
Rr633515	regulatory region 633515	1294 bp distal
Rr633516	regulatory region 633516	793 bp distal
Rr633517	regulatory region 633517	99 bp proximal
Tssr61864	transcription start site region 61864	1285 bp upstream
Tssr61865	transcription start site region 61865	1266 bp upstream
Tssr61866	transcription start site region 61866	825 bp downstream
Tssr61867	transcription start site region 61867	1701 bp downstream