rs3683314 SNP Detail

Summary

• ID
  rs3683314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82926412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGAAGAC ACTTGCATCC CAGGCACACC ATTCCGTTTG
  GTCTATGCTG GGTCCATCTC TAGAATTACT GATTCTTTCT TATTCAGATT CCCTTTTCCA
  Y
  CTCCTCTTAA TGAGCAGTCA CTATAGTAAA TTTAACAAAT GATACGTTAT TTGCTTTCCT
  GCTTGTCATA AATTATATGT ATATATTGTA TTAAGTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5059359	WI_WGS_3_83711585	WI	MOUSE	f	SNP	C					T
ss50990200	NES13925938	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	C	T	T		C	T	C		T
ss320820840	CHEV_3_82823027	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3683314					SNP	C	C	C	C	C	T	C	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990200	NES13925938	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82926412 () rs orientation: forward

Symbol	Name	Function Class
Rr578819	regulatory region 578819	1041 bp proximal