About   Help   FAQ
rs36833128 SNP Detail
Summary
  • ID
    rs36833128
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:45385809 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACCTCTTCT CTTTCTTTAA
    TGAGAAGCTT GAAAATGAAG TTTCCACGTA GGGAGCAAAC CCATGTGGTA CTCATAGAAG
    ACCATCAGAG GATAATCATG GCTTTGAGGG TTATAACTAC ATAGCTAGAA AATCTTACAT
    GTAAAATCCC TATTAATGTA ATTTGATTAT TACTATGTCT CTGCTGGAAA GAGTTAATAT
    K
    TTTGAGGACG AATCATATTT TGAATTAATG ATCAGAACTG CAAATGTAAT CAATGTATTT
    TTTTTCATAA TAAAGCAACC ACAAAAATCA CACCAAATAC CATTCATTTG CTTAAATGTC
    ACTTTTAGAA TAATTTTTTT CTTTTTTTTT TTTCTTCAAA AACTTTACCC TTATTGAATG
    TGCATTGGGC TTGTGGACCT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51513067 NES14696148 PERLEGEN MM_PANEL2 f SNP G G G G G G T G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36833128 SNP G G G G G G T G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51513067 NES14696148 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:45385809 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700027H10Rik RIKEN cDNA 1700027H10 gene within coordinates
Pcdh10 protocadherin 10 Intron
Noncoding-Transcript-Variant
Rr576058 regulatory region 576058 365 bp proximal
Tssr29010 transcription start site region 29010 1473 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory