rs36832281 SNP Detail

Summary

• ID
  rs36832281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8578165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGTTA AAAATCTATG
  AGGAAAAGCA TGTTTTTAAA TGACCGTTAA GATTCGATTC GTTGTAGATT GAAAAATTAA
  ATTCTAGACC TCTGTTTCAT CAAAATTCCT AGCAGTTTTG CACTGACTTA CTTACAAACA
  GATTTGTGGG TTGTTTATTT TTTATGAGAG CCATTGCTTC TTCATTAGAC ATTTTTTTTT
  Y
  TATAGGATTT CACTTCTGGC ATTTAAATGT TACCATTACT TTTTATTTAA AATTTTAATC
  GCTTATGGAT AAATAGTAAT TTGGAAAAAT AAACATTAGG TCATTTGGCA CGATATGCCT
  TTCATCAAAT ATCTGTCAGT TTAAAAAAAT GCTGCAAGAA GTTCCATTTT ATGTAGACTC
  AGAACATGCC CTCTCGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51431710	NES14443116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36832281					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51431710	NES14443116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8578165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12960	CpG island 12960	1359 bp distal
Rr374470	regulatory region 374470	842 bp downstream
Rr573294	regulatory region 573294	468 bp proximal
Rr573295	regulatory region 573295	759 bp proximal
Stmn2	stathmin-like 2	Intron