rs36832266 SNP Detail

Summary

• ID
  rs36832266
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85308189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGAGTC AAATGTTAAG GAGTGGGCCC TGAAAAACTT
  TGGGTCCCTT CAGATGTGAG GTCTAAATCT CACAAATAGA GGAAAGCAGT GCAGGCTGTT
  W
  AAGACTGCTG CATGGATGGG AATCACCTGA TCAGACCTGC ACTGTTGGGA CTCTGCCATA
  GAGGAAAAGG AGGAGCTGGG AGACGGCCAG AGCAGGACTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51355983	NES13743477	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36832266					SNP	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355983	NES13743477	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85308189 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17641	CpG island 17641			1160 bp proximal
Rr399729	regulatory region 399729			1747 bp upstream
Rr633174	regulatory region 633174			within coordinates
Rr633175	regulatory region 633175			1533 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant
Tssr57414	transcription start site region 57414			1357 bp upstream