rs36830478 SNP Detail

Summary

• ID
  rs36830478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130912264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGAAGGC AGCTATGGTG ACCTACTTGG CGTCAGTGTA
  AGTTCTTCAA GCACAGAGGT TGAGGAGATG CGCAAGCCTG CTAATATTTC AGAACCAGGA
  S
  CCCAGGAAAG TTTATTAAAA GCATACTTCC AAACCTTTCT TCCTCTGAAG CTTATGTTTG
  AAAATAAAGC CATTGCTGAG TTATAAAGAC AACAACAACA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51635291	NES14651387	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36830478					SNP	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635291	NES14651387	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130912264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr398023	regulatory region 398023			357 bp downstream
Rr585273	regulatory region 585273			13 bp distal