rs36828669 SNP Detail

Summary

• ID
  rs36828669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15186618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGGTCT TTTGTCAAAC
  CTCTGTGAAT ATATGTATGT TCATACACAT ACATATGTAA ATATATATTC ATATCTACAT
  ATAATTTCCA GCAGTACATC TTTGTAAAGT GATCAGTAAT TTTTAAAGGC TCCGTTAAAT
  TTCTTCAAAT AGGTGCGCTA GTTTAATTCT TGTGTCAGTT AGAGAGGTGG CTTGCCTGCG
  Y
  TGTAAATTAC CATTTCTGCA CTTTTCATTC TGGCTGCTTT AAAAAAAAGC GTCTCAGAGA
  CTGGGATCCT ATTGGGCCCA TCCTAGGGCT ACAGTAATTG CCTGATGACA ACTGAAAATG
  ATAGAATAAT TGTCAAGAGA GACATTTTTA ATGGGCAAGG TGATTTAAGT ATGCATGAAG
  AAGCTATGAG GGGAGACGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51242617	NES13801221	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C	T	T	T		C	T	T		C
ss321751558	CHEV_6_15136619	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36828669					SNP	T	T	T	C	T	C	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242617	NES13801221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15186618 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			704 bp proximal
Rr626647	regulatory region 626647			1962 bp distal
Rr626648	regulatory region 626648			1103 bp distal
Rr626649	regulatory region 626649			212 bp distal
Rr626650	regulatory region 626650			within coordinates
Rr626651	regulatory region 626651			1321 bp proximal
Tssr54975	transcription start site region 54975			1957 bp downstream
Tssr54976	transcription start site region 54976			1874 bp downstream
Tssr54977	transcription start site region 54977			1852 bp downstream
Tssr54978	transcription start site region 54978			1375 bp downstream
Tssr54979	transcription start site region 54979			1226 bp downstream
Tssr54980	transcription start site region 54980			1167 bp downstream
Tssr54981	transcription start site region 54981			1099 bp downstream
Tssr54982	transcription start site region 54982			1024 bp downstream
Tssr54983	transcription start site region 54983			993 bp downstream
Tssr54984	transcription start site region 54984			964 bp downstream
Tssr54985	transcription start site region 54985			954 bp downstream
Tssr54986	transcription start site region 54986			760 bp downstream
Tssr54987	transcription start site region 54987			185 bp upstream
Tssr54988	transcription start site region 54988			232 bp upstream
Tssr54989	transcription start site region 54989			283 bp upstream