rs36827704 SNP Detail

Summary

• ID
  rs36827704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8831926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTTATT CTGTCATTCA
  CCCAAGACCC ATTCTCTGCC AGCCTCCATG CTGGGCATCA GGACTGATGC AAAATTGGGG
  TTCAGACAAG AGGCTTGGGT TGTTGCAGGC CTGGCTTGGA GTTCACCGTA GCCTGAAGTT
  CTAGCATCCT TTTGTAAAAA GAAGCAAGGT GAACTTTGGT TTTTGTTTCT TTCATCTAGC
  Y
  TAATTTTTTA GTTCCTTCTG CCATAGCAGG TGCATACCCC TGATCTGACT CTCAGCTCTC
  CTTCCCTTAG ACCATGTCTG TAGTTTTTGT ACATGAGTGT GTGTGAACAA ATCTCTATGG
  AATGCTTAGT GTCTGACCTC ACATTTTCCA TGTGTAATGG TAATGCTCCC ATTAGCTTAC
  AGTGACCATC TCCCTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51546723	NES14862664	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36827704					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51546723	NES14862664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8831926 () rs orientation: forward

Symbol	Name	Function Class
Rr626446	regulatory region 626446	373 bp distal
Rr626447	regulatory region 626447	500 bp distal