rs36826029 SNP Detail

Summary

• ID
  rs36826029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130742271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGGGTTT CTGAAATCAG CCTTCAAAAT ACAAACTATT
  GACATTTTCA AATAAAAGCA CTATATTTTC AGTTAGTGTT CCAAGTTTAA ACAGTCTAGC
  R
  ATCAAAGGCC AACATGTTTA AGTGTGGCAC ACCGTCTTCT ATTTTATGGG AACTATCATT
  TTGCACTAAT GTTGCCTCTG TTTACCCGAG TGAAGCCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51636317	NES14654827	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	G	A	A	G
ss135902649	ENSMUSSNP889500	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36826029					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636317	NES14654827	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130742271 () rs orientation: forward

Symbol	Name	Function Class
Gm65596	predicted gene, 65596	1230 bp upstream
Rr585244	regulatory region 585244	1241 bp distal
Rr585245	regulatory region 585245	933 bp distal
Tssr35670	transcription start site region 35670	1283 bp upstream