rs36822393 SNP Detail

Summary

• ID
  rs36822393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79996846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGAGA GGGGGGCAGA
  CGGTTTTTGG ATGACAAAGG ATGGGTAAGC GAACTTTTGT TGTTTTCTTC TCAGCAAAGC
  TGATCCTAAC CCCCCGCATC CTCAGCTGGG CATTAGCTGC TAAAAGACCA GGAAACAGGC
  ACAAAGCGGC AACCTCTACT TTACCCGTTG TCTCACTATA GTTGCTATTA TATTTTTAGA
  Y
  CCTTTTCTTT TGGCAGTGTT TTATTTTTCT TTTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTTTTTA ATCTATAAAT GCATAGCGCG GACTTAAACA CACGCTGGAG GGATAGCTTT
  AAGACTGTCT CTAGCGTCTG CGTATCCACA GCTTGAGAAC AGGGTATGAA ATAAATACCG
  TGTTTGCTTC TATTTCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51705492	NES14809928	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs36822393					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705492	NES14809928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79996846 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632526	regulatory region 632526	805 bp distal
Rr632527	regulatory region 632527	944 bp distal
Rr632528	regulatory region 632528	210 bp distal
Rr632529	regulatory region 632529	within coordinates
Tssr57230	transcription start site region 57230	918 bp downstream
Tssr57231	transcription start site region 57231	866 bp downstream
Tssr57232	transcription start site region 57232	833 bp downstream
Tssr57233	transcription start site region 57233	784 bp downstream