rs36821211 SNP Detail

Summary

• ID
  rs36821211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26324628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTACCA CTGACATTCT
  GGATGGGTCT TACCTCTTCA GTTTTATTCT CTGGGAACAT CCCAACAGAT TCTAAAACTA
  GTCAAGCTAC AACACTTCAC AAATAGCTGT ATATATATAT ATATTTTTTT TTTCTGATAG
  TACTGCACCA GTCCATGATC AGAAATCGAT CAAATAACGT TTTTTTTTAA ATAGCAGATT
  W
  TACAGGGTAG TGATCTATAG TTGAATGATT AATCAGCATA TTACAAGCTC TTAAAGCAGT
  GCCTGTATAC ATTGCTTCTC CACAAATTTG TAGACATGCT TTAATAAATA GTCTAGAGAC
  AAAACTGTTC TCAAGCTTCC TGGGCATTAT CAAACCTTCC CTTTTCTGTC TTCTCTGCAT
  GGTTTAACCT TTCTTCCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51445364	NES14436685	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36821211					SNP	A	A	A	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51445364	NES14436685	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26324628 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574313	regulatory region 574313	552 bp proximal