rs3682119 SNP Detail

Summary

• ID
  rs3682119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17853364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT CACCTCTGAA ATCTTCCTAG
  Y
  AAGTACTCAA ATGGTAAAGC TACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5058160	WI_WGS_3_17515333	WI	MOUSE	f	SNP	C							T
ss45497755	mCV22663605	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss46817805	NES10864847	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		T	T	C	T		T	T	T	T		T
ss134653818	ENSMUSSNP6241734	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320673730	CHEV_3_17699200	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3682119					SNP	C	C	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817805	NES10864847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17853364 () rs orientation: forward

Symbol	Name	Function Class
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573852	regulatory region 573852	within coordinates
Rr573853	regulatory region 573853	753 bp distal
Rr573854	regulatory region 573854	591 bp distal