rs36820306 SNP Detail

Summary

• ID
  rs36820306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143946229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAGAGC AAAGAGTTAA
  TCGGCTGGAT CACTTAACTG GTCAGACATG TAACCAGTTG ACTTTATCAT TATTTTAAAT
  CATATTTAGA AGTGTGTGTG TGTGTGTGTT TGTACATACA CGTATATACT TATATCTATG
  CTTTGAAACC AAAGAACTCC AAGTTCTTTG TTTATACAAA ATGTTGACTT GTGGGCAAGA
  R
  GAAAAACTCA CCTACCACCA CCACCACCTC ACTCCACCCC CAGTGTTGTA ACTGCTCTGA
  GATCACAGGT CCGTGAGCCT TGTGCCATCC CTGGTTTGCA GCTCTGGGAA CATCCATGTC
  TGATGTTGGA GGGAAAATAA GTCTGCATTT GTCTTACAAG ACTTCCAGCT GAGCTGCCAT
  CCAATGTCAT TCAGTAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51654968	NES14643016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36820306					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654968	NES14643016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143946229 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	1638 bp upstream
Rr586608	regulatory region 586608	1486 bp proximal
Rr586609	regulatory region 586609	1493 bp proximal
Rr586610	regulatory region 586610	1754 bp proximal