rs3681867 SNP Detail

Summary

• ID
  rs3681867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107589174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACTTCC TTCTGTGTCC
  CAGGCTCCTT CTCTTATAAG AAACCAGTCT CCCTGGACTT AGGCAACAAC AGTGCTTACC
  CACAGTGACA GAAAGCTCTG ATGGTGAAGA ACCAGCCTGC TTTCATCTTA GACTTAAAGC
  CATCTTACCG GAAAGACAAA CTAGGTTTGT TCCTAATTAT GATTAAATCT GTTTCCAAGG
  R
  CTGCTATGCC CTACCTATAA TCTTACTTAC AAATGGTCCT GTACTGAGTG TTCCAGGAAT
  GACAATCAGA CCTTTGTTTA AAAAGCTGTT TATAGTCATC TTGTAACCCT ACCTTTGTTT
  CAAAATGTTA TAAGACCACC TGTGACTATC TTATAATGAC TACCTGTTAT TACGACTACC
  TTGTTAAGCC ACCTTGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5057907	WI_WGS_4_105466088	WI	MOUSE	f	SNP	G	A
ss321250544	CHEV_4_107404582	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3681867					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107589174 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	1494 bp proximal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	1349 bp proximal
Rr597051	regulatory region 597051	171 bp distal
Rr597052	regulatory region 597052	229 bp proximal
Rr597053	regulatory region 597053	1784 bp proximal