rs3681649 SNP Detail

Summary

• ID
  rs3681649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121848882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGTGC TCGTACTACA
  GGCAAGAACA CCATGCCTGC CTTTAATTCA CTGGAATGAC TTTAATAGGT TGAGGGTTTT
  TTTTTTTCCC TCGGCCCATC ACCTTCTTAA GCAATTTCAC TTAGAAAAGA AAGAAAAAAA
  AAAAAACCAA TTTAAACTCA TTTGAAAAAA GTTAACCATT TGTTTCCAAT TTAATTACAA
  S
  ACCTTAAAAA AAAAAACGGA CCAGTGTTTG GTGGCCTTCC CGAGTTAAAG TAAAAGTTTT
  TAAAAGGGGT CAAGGTCTAA AGTTGACATT CTTGGGAAAG TCTGTTTAGT CTTCACCGAG
  GGAGACCCCA TCACCCAGTT CTACTACCAA TCAGGTCCAT TTCCCTTCGG GTCCCCTGAA
  GGAGGAACTA AGAAGTCCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5057688	WI_WGS_5_119774241	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3681649					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121848882 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	within coordinates
Atxn2	ataxin 2	912 bp upstream
Cpgi16531	CpG island 16531	210 bp proximal
Rr619651	regulatory region 619651	within coordinates
Rr619652	regulatory region 619652	636 bp proximal
Rr619653	regulatory region 619653	840 bp proximal
Tssr48591	transcription start site region 48591	966 bp upstream
Tssr48592	transcription start site region 48592	1089 bp upstream
Tssr48593	transcription start site region 48593	1220 bp upstream
Tssr48594	transcription start site region 48594	1249 bp upstream
Tssr48595	transcription start site region 48595	1648 bp upstream
Tssr53053	transcription start site region 53053	636 bp downstream