rs3681617 SNP Detail

Summary

• ID
  rs3681617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87071349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT GAGCACCAAA CCCTCTGCTT
  Y
  CGACATCATG TCATTCAAAT TGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5057655	WI_WGS_3_87949661	WI	MOUSE	f	SNP			C	T
ss135454888	ENSMUSSNP2082719	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320831187	CHEV_3_86967964	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3681617					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87071349 () rs orientation: forward

Symbol	Name	Function Class
Gm37855	predicted gene, 37855	1587 bp downstream
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr2003	regulatory region 2003	830 bp proximal
Rr579450	regulatory region 579450	288 bp distal
Rr579451	regulatory region 579451	120 bp proximal
Rr579452	regulatory region 579452	1083 bp proximal