rs36814407 SNP Detail

Summary

• ID
  rs36814407
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15183577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAACT TTTGTTGGTA
  AAAATGAATA TAAAGCTTTT AAATTTTATG TTAATTGTTA CTACACAGCT TTCTAAGCTG
  ATAAGGCTCT ATTGCTAAGG ATGTTATGTT ATCATTTTAG TGAATGTAAA CAGATTTGTG
  TGAAAATGTT ATTTGACGGA TACAATAATG GAAACTATCT TTTATTTCCT CTGGAGAACA
  K
  AATGTCATTT GTATCACTGT TTATAACACC GGTGTCGGAG ACATGTGGAG GTACTTTTAA
  AACTGTAAAG AGTTGGTAGG AAAAAATGTT TTAAAATGAA CAAACAGGCT TAAAACATAT
  TTCTAAGTAT GTTGTGCTTG ACTCTCTCTA GTCTTTTAAT TCCGTTTACA TGGGAGTTAC
  TCCTTCCAGC TCATACAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51242625	NES13801345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	G	T	T	T	T		T	T	T	T		T
ss321751555	CHEV_6_15133578	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36814407					SNP	T	T	T	G	T	G	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242625	NES13801345	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15183577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			270 bp distal
Rr626647	regulatory region 626647			579 bp proximal
Rr626648	regulatory region 626648			1438 bp proximal
Rr626649	regulatory region 626649			1939 bp proximal
Tssr54974	transcription start site region 54974			992 bp upstream
Tssr54975	transcription start site region 54975			1053 bp upstream
Tssr54976	transcription start site region 54976			1153 bp upstream
Tssr54977	transcription start site region 54977			1176 bp upstream
Tssr54978	transcription start site region 54978			1637 bp upstream
Tssr54979	transcription start site region 54979			1792 bp upstream
Tssr54980	transcription start site region 54980			1861 bp upstream
Tssr54981	transcription start site region 54981			1878 bp upstream