rs36812469 SNP Detail

Summary

• ID
  rs36812469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATGCAT GTGGCCGTCT
  CTGTAGACTT CTGTTATTTC CTGCTTCTTG GTGTTGGCTG TTGTTTTTGA TGAGGTCTAC
  CAAGCTTCAT CCTGCTTTTA CACTCCTTGT CCCTCATCGA CCTTTGGAAG CTGGAGACCT
  TGAAACTTAA ATGCAAGACA TGTCCTGATA AGCCATACTG GGCGTGTCAG GCTCTCATGT
  R
  CTTCATGGCA CAGCACCACA GAGCATGGGT TCCAGGGGAT ATCCCCAGTG CCCTGCAGTC
  TCCTTAGTAA TTTCACAAAC TCTCCTTTGT TCTCTCTGAG AAGTCTTTAC CATTAGAAAG
  CCATTAAATC TTATATCAAG TCCTGTATTT AATAATTTTT CTGATTCCTT TAAATGTCAC
  CAAGAAATGT TTAAAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51808886	NES14771197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36812469					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808886	NES14771197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368140	regulatory region 368140			1894 bp downstream
Rr368141	regulatory region 368141			1313 bp upstream
Rr636220	regulatory region 636220			1396 bp distal
Rr636221	regulatory region 636221			within coordinates
Rr636222	regulatory region 636222			1051 bp proximal
Tssr58110	transcription start site region 58110			1996 bp downstream
Tssr58111	transcription start site region 58111			1954 bp downstream
Tssr58112	transcription start site region 58112			1931 bp downstream
Tssr58113	transcription start site region 58113			1912 bp downstream
Tssr58114	transcription start site region 58114			1898 bp downstream
Tssr58115	transcription start site region 58115			1861 bp downstream
Tssr58116	transcription start site region 58116			1635 bp downstream
Tssr58117	transcription start site region 58117			1616 bp downstream
Tssr58118	transcription start site region 58118			1570 bp downstream
Tssr58119	transcription start site region 58119			1529 bp downstream
Tssr58120	transcription start site region 58120			945 bp upstream