rs36811377 SNP Detail

Summary

• ID
  rs36811377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97718294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTGTGGC TCAGTAGTGT
  GAGTTCCATC GTGCCCAGCT CCTCCGTGAG AGTGGTGGGA GTGCTGGCTC CATGATCAGC
  CTCTTAACAC AGAGACAAAG ATTGCTTCTG TGAGCTCCCT GATAATATAT GGTTGTATGT
  CTCACGTGGC TATATATGTT TTTGTCTCCA AAGCACCCCT AAGCTTTCGT GGGAATTTTC
  R
  AGTGGTAACT GGGAAGATGG CTCTGTCAGT GAAGTGTTCT TTTCATAAAC ATGAAGACCT
  GAGTTCTTTC CCCAGAACCC ACATAAAATT GCTCCACGTG GTGGGGCAAG CTTGTGACCT
  CAACACAAAG GAGGCAGAGA CAGTCGATGA GGGGCTCAGC CGCCAGACAT TCCGGCCTAA
  CTGTCAAGGT CCGGGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51376247	NES13728236	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36811377					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376247	NES13728236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97718294 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	820 bp downstream
Rr635214	regulatory region 635214	907 bp distal
Rr635215	regulatory region 635215	1004 bp distal
Rr635216	regulatory region 635216	within coordinates