rs3681054 SNP Detail

Summary

• ID
  rs3681054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116529175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAC TGTTGGTGGT ATGCAGAAGG
  R
  GTACTTGATT TAGGCTATAA CAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5057087	WI_WGS_3_117074184	WI	MOUSE	f	SNP	A			G
ss60436380	NES15938103	PERLEGEN	MM_PANEL2	f	SNP			A		A	A		G	A	A	G		G
ss135671447	ENSMUSSNP821709	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss320896017	CHEV_3_116438444	CHEVERUD	SCREENING_POP	f	SNP							A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3681054					SNP	A	G	A	G	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436380	NES15938103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116529175 () rs orientation: forward

Symbol	Name	Function Class
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr375627	regulatory region 375627	989 bp downstream
Rr583772	regulatory region 583772	1857 bp proximal
Rr583773	regulatory region 583773	1934 bp proximal
Rr583774	regulatory region 583774	1959 bp proximal