rs36808958 SNP Detail

Summary

• ID
  rs36808958
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83697350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCGACGA TCATGGCGGA
  GCTCAAAGCG GCGGCCGTGC TGGAGGTAGC CCCGCAGCTC GAGCAGGTAC CCGCGGGGTG
  AGAGCCAGGG ACCCCGCACG AGTCCTGAGG ATGTGGCCCC GCAAGCGCGA GACGCGGTCT
  GTTCTCCAAG ACTCCGCCCA CAGGGATGTA AGCCGGCCCC GGACGGAGGC AGGGTCTCCG
  S
  ACCTTCTGGG AAATGGCCCC TTTCTCGTTC CTCCTTCTCT CCGGGCTTTC TTCCTTCTCT
  TCATCCTCTC TCCCAGGCTG TTCCCTATCT GTTCCCACCA GTTCCCACTG GCTCAGGGTA
  AAAGAGAGGC GAGGCACTGT ACTTCCACCT TCTCCTTCCG CCTTGAGGTA ATCAATCTAA
  GAGTGCTCTG AGTCACTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51559277	NES14677634	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36808958					SNP	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559277	NES14677634	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83697350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	within coordinates
Gm7115	predicted gene 7115	within coordinates
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	within coordinates
Rr578903	regulatory region 578903	190 bp distal
Rr578904	regulatory region 578904	within coordinates
Rr578905	regulatory region 578905	189 bp proximal
Rr578906	regulatory region 578906	318 bp proximal
Rr578907	regulatory region 578907	1339 bp proximal
Tssr33830	transcription start site region 33830	82 bp upstream
Tssr33831	transcription start site region 33831	51 bp upstream