rs36807293 SNP Detail

Summary

• ID
  rs36807293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101618933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCTGAG CCGTGTTTTT
  CAGGTCTAGC TTCTGTTTCA GACTCACAAA TTCTACAGCA CCTTGGTACT GGAAAGAATT
  AATGGGCCAG TTGACCCAGA CACACCATTT CCAGCTCAGT GAAGGTAAAT CTCTTGCCTA
  GTGTCTCAGA ATCAGCTAGT CACAGCCCAG ATCCAAACCT TGATTTCCTC CCTCCGTGGA
  R
  CTGCCTGGAC GCCTCAAAAG GGCCTCTGAA TTACTCTTTG CCCAGATCCC TGCAGTAAGC
  CTTTATGGCT GGCCTCACGG TTTTTTGGAT CCAAGCCAGT GTTGGGGAGG GGTGTCGGGG
  ACGAGAAGAA AACACCTGGG GAGTGACAGG ATGGTCCTCC AGTTAATTTA TCCACATCTG
  CGGGGACCAA TTGGAATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51582617	NES14672096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36807293					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582617	NES14672096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101618933 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	395 bp upstream
Rr1547	regulatory region 1547	130 bp proximal
Rr375471	regulatory region 375471	65 bp upstream
Rr582111	regulatory region 582111	1577 bp distal
Rr582112	regulatory region 582112	within coordinates
Rr582113	regulatory region 582113	406 bp proximal
Rr582114	regulatory region 582114	1151 bp proximal