rs3680427 SNP Detail

Summary

• ID
  rs3680427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137952944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA AATCCATATG TTGAAGCCCT
  R
  ATCCCCAAAG TGAAGGTGCT CGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5056454	WI_WGS_3_138748594	WI	MOUSE	f	SNP	G		A
ss45403218	mCV23939850	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135950506	ENSMUSSNP1843875	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320978975	CHEV_3_137910147	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3680427					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137952944 () rs orientation: forward

Symbol	Name	Function Class
Rr586105	regulatory region 586105	594 bp proximal