rs36799724 SNP Detail

Summary

• ID
  rs36799724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72871372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGCTA CAATGGAGGC
  TGAAGCAAGA GGATCACATG TTCAAGGCCT GCCTGAGACA TTGTAAGTTC ACAGAGTAAA
  GAAGACTGTA TCAAAACTTT AACTCCCTTG TCTAGTATGC CAGAGACTCT AGGTTCCAGC
  CTCAGCACTG CAAAAGAACT AAATAAATTA GTAAACATAC GGAGTATTAT TTCTACTTGA
  R
  ACTGCAATCT CTTACTAAGC ATAGTATAGA GAAGGGCTGG GGTTGTAGCT GTTGGCAGAC
  TGCTGGCCTA GCACTACATA AACACAACAT AATGATGTGC ACCTCTAATT CCAGCCTAGG
  AGGTGGAAGC AGGATCACAA GCTGAGAGTC CTCCTCCGTT ACACAGGGAG TTAGCGGCCA
  GTGCAGAGTA CACAAGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51691881	NES14821520	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36799724					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51691881	NES14821520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72871372 () rs orientation: forward

Symbol	Name	Function Class
D530018E20Rik	RIKEN cDNA D530018E20 gene	573 bp downstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632326	regulatory region 632326	687 bp proximal