rs36793842 SNP Detail

Summary

• ID
  rs36793842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91179172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACAGAA AAGAAAACAG
  CGTTTTAAAG CAAAGGACAT GGGCAGAAAC TTCAACAGAG AGGAAAAGCA GATGGCTGAG
  ATATGGCTGA GCTCATCTCA GAGGGTCATG TGAATGAAAA CCACACAGAG ACACCAGTTA
  ACACCTACTG CATGGGCACA TGTCAGCAAG GGGCAGGCAG GAAGGGAGGC AGCAGCTAGC
  S
  AGGTCACACA TGGGTAGGGA CATTCGGAAA CAGCAGTCTG GCCTGGGCTA GTGAATTCCA
  TCAAGTGTAA ACTCCGTGAC TCAGCCCCTG ATGTCCTGGA TTACTGCCCA AGAGGACTCC
  TACGGATGTC ATAGGGAGAT AGCTACAGAA AGTGTTGAGG CAGAGTTGTA ATGGGAACCA
  AGAAAACAAA ACAACCTAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51363725	NES13733011	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	G		C	G	C	C
ss133382242	ENSMUSSNP937529	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36793842					SNP	C	C	C	C	C	C	C	C	C	C	C	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363725	NES13733011	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91179172 () rs orientation: forward

Symbol	Name	Function Class
Rr634420	regulatory region 634420	637 bp distal
Rr634421	regulatory region 634421	within coordinates