rs36792863 SNP Detail

Summary

• ID
  rs36792863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72623820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAGGTT GGAGGGTGAC
  TTGCAGGGGT CAGTGCTCTC TATCAAGTAG GCCCTAGGGA TTATACTCAA GTCACAGGCA
  TGGAAGCAAG CACCTTCATC TGCAGAGTCA CCTCCCGGCC TGTTTATGTT CTGCAGTATT
  AGAACAGAGT ATGATGATGT GGAGTCCACT GGAACATCAC CTGCTTCACT ATCTATAAAG
  Y
  AACGTGTGCC ATCGGTTCTT GCTTTTCTGT ACTCGGACAA CATGAGGCCT CTGTTTTCCC
  GCTGTGCTGG GATCTGGTAT CCAGATCACT CATCTGCATT CTTCTGTCTC ATCCACTCAT
  CGGCAATGTC TAGATGATCG GCAGCTGCGA CTGCCAGAGG CTTCTTGAGA GGTTAGGGAT
  TTCATATACT TTTCTGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51694815	NES14818972	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36792863					SNP	C	T	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694815	NES14818972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72623820 () rs orientation: forward

Symbol	Name	Function Class
Rr632258	regulatory region 632258	954 bp distal
Rr632259	regulatory region 632259	390 bp proximal
Rr632260	regulatory region 632260	650 bp proximal
Rr632261	regulatory region 632261	1279 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron