rs36792247 SNP Detail

Summary

• ID
  rs36792247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCATT TCTATTCTGT
  TTCCCTGTGT TATATAGAAT ATAGTCCAGG AGGCTCACTT ATTATCTGAG CACCTCTCTC
  TTCATTCAGT GTTGATAAAG TGTGTGTGTG TGTGTGTGTG TGAGTATTGA GCACTAGACC
  CGGTAGGCAA TGCAGCTGGG AGCTTCCAGA TGACCACAGC TCCCAGAGAT CAGCACAGAG
  Y
  TGATTCACAG GTATACCAAA CCCTTGTCCA TTTCTGGCAG AATGCCTTTG TAGTGGCAAT
  TTCGATAGCT TCAAGATGGG TTTTCTGTGA AAATGTCCTC ATTCTGAAAA TGATAGCACC
  AGCATTATTT TTAACCACAT GGTATAAGAG TATTTCAATG GATTGAAAAA TCCATTCCCA
  TGATCACAAG GAATTCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51062500	NES13894505	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	C		T	C	C
ss136105644	ENSMUSSNP1230656	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321029586	CHEV_3_152680157	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36792247					SNP	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062500	NES13894505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722830 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	866 bp proximal