rs36791116 SNP Detail

Summary

• ID
  rs36791116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGAATT GAAGACCTGT
  CTTCGGGGAA GACTCAGTGC TAGTCCCCAC CTGAGTCTTT TATGGGAAAC AAAGGCCAGG
  ACTCCATCTG ACCCAGGCTC ATCTGGGATC TGAGGTCTGG GATCAGGGAA GGGCTGACCT
  CCAGTAGGAG TCTTGACTCT TTCTGAGCTC TGACAGGTGA CATGCGACTT CTTCCAACAG
  M
  TGGCAGGCTC TCCTGGGAAT GCCCAGGAGT GCACTAACAG GGCATCTGCA TCTTGTCTTA
  CTTCTGGGGA CCTGATCTAA CCCAGAGCGA CAAAACAATG AATAGAGCTG TTCAACTTAA
  GGACTCAGAC TTCACACTAA AGATATCAAA ATTAGGCACC ACCAGGCACA CACATGATGT
  ACCTGCACAC TTGCAGACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51749404	NES14799925	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36791116					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749404	NES14799925	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771959 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1393 bp upstream
Cpgi17670	CpG island 17670	1104 bp distal
Rr633515	regulatory region 633515	1404 bp distal
Rr633516	regulatory region 633516	903 bp distal
Rr633517	regulatory region 633517	within coordinates
Tssr61864	transcription start site region 61864	1395 bp upstream
Tssr61865	transcription start site region 61865	1376 bp upstream
Tssr61866	transcription start site region 61866	715 bp downstream
Tssr61867	transcription start site region 61867	1591 bp downstream