rs3678992 SNP Detail

Summary

• ID
  rs3678992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC ACCGTTGGGA CCGGGGTTAG
  R
  AGCAACTCTG GGTTTCCCAC TAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5055009	WI_WGS_6_87651656	WI	MOUSE	f	SNP							G	A
ss45938263	mCV22848133	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss51749419	NES14799920	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		G	G	A	G		G
ss133359408	ENSMUSSNP3443681	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321847293	CHEV_6_86744027	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3678992					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749419	NES14799920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771015 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	449 bp upstream
Cpgi17670	CpG island 17670	160 bp distal
Rr633515	regulatory region 633515	460 bp distal
Rr633516	regulatory region 633516	within coordinates
Rr633517	regulatory region 633517	933 bp proximal
Tssr61864	transcription start site region 61864	451 bp upstream
Tssr61865	transcription start site region 61865	432 bp upstream
Tssr61866	transcription start site region 61866	1659 bp downstream