rs3678572 SNP Detail

Summary

• ID
  rs3678572
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34687145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CAGATAACAC GAGGGTTCTG
  M
  GGCTTTAGAA ACGTGGAATT CTGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5054584	WI_WGS_6_34887419	WI	MOUSE	f	SNP	A							C
ss45910640	mCV24689591	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss51270965	NES13789528	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	A		A	C	A	A		A	C	A	A		C
ss133112980	ENSMUSSNP2611794	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321782451	CHEV_6_34660210	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3678572					SNP	A	A	C	C	C	C	A	C	A	C	A	A	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51270965	NES13789528	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34687145 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Rr628363	regulatory region 628363			566 bp distal
Rr628364	regulatory region 628364			within coordinates
Tssr55522	transcription start site region 55522			764 bp downstream
Tssr55523	transcription start site region 55523			713 bp downstream
Tssr55524	transcription start site region 55524			668 bp downstream
Tssr55525	transcription start site region 55525			624 bp downstream
Tssr55526	transcription start site region 55526			575 bp downstream