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rs36783009 SNP Detail
Summary
  • ID
    rs36783009
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:89010786 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGGCTGTA AAGAGCTTAC
    ACTCTGCTAA CCTAGTAGGA CACCTGCTGG TGTTCCTAGG TCTGAGCCCA AAGGCTGTGC
    TTCAGAAAGC CTGCCTGAGG TCCCCACCCT ACAACCGTTC AACAGATCCT GGCTGAACTC
    AGAGGACTCC CTGGTGGCCT CAGGGCAGCT CCTGGATGTC CTCTTGGGAG AGGCTCCAGC
    Y
    TGCTGTCCAG GATTGTGAAT GCCTCAGAGG CTATAGGCTG GTGACTCTCT GTGAGTCACT
    TTGCTGGCTG TGAGCAGAGG TCACAAGACA TGCACAGTGA TACTTCTTGT GAGACACCAC
    ACAGGGCCTC ACTGAGTCTC TTGTCCATCT GAGGTCCCCC CCTGACCATT CCCCCTTCTC
    AACTGAGGTC TTCTACTCCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
WSB/EiJ
ss51760897 NES14794791 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
WSB/EiJ
rs36783009 SNP C C C C C C T C C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51760897 NES14794791 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89010786 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm66902 predicted gene, 66902 within coordinates
Rr1306 regulatory region 1306 872 bp proximal
Rr634069 regulatory region 634069 286 bp proximal
Rr634070 regulatory region 634070 1240 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory