rs36780935 SNP Detail

Summary

• ID
  rs36780935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTAAGA GCTCTCTGAA
  GCTCCACAGC AGGTTGGCCT GGGATTGGGA CCGTTGGCAC GACAGATGCT GTAGGTGGTA
  GTCACTCGGC TCCTCTGACC CTAAACCACA CAGGTAGGAA GAGGCTGCTT TACCCTAAGA
  ACAAAGCAGT TGGCAGGTTT GTTGTAGAAA AAAGGGGGGA TGTCGGGGAA GCTTGAGTAG
  Y
  GACAAGAAGT GAGATCTGCC CCCTACCATC TCACGCAGGA ACGGGGGAAT GAAGAAATAT
  CGCTTGTGAA CAATCCTTCC TTCTGTAAGC AGTTAGAAGA TAGGTTCAAA ACTGATGTCG
  CCTTTAGGAA CCCTTAGCCT TGCCAAACAG GATATAGGCT CTTTCTGTTT TCATCCCGCT
  GAGAAGAGAA AAGCTAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442546	NES14434479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36780935					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442546	NES14434479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691974 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	271 bp upstream
Gm65438	predicted gene, 65438	983 bp downstream
Rr574324	regulatory region 574324	1388 bp proximal
Rr574325	regulatory region 574325	1622 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	188 bp downstream
Tssr28598	transcription start site region 28598	165 bp downstream