rs36780102 SNP Detail

Summary

• ID
  rs36780102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:49422110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAGTGAC AAAATCACCA
  GCTTTTTTCA GAGTCACTGA CTCAATAGGG AAAAGGAGAT TAGGATGAAT GCTGCAATGT
  CTGTCACAAC ACAACTTTAG GAGAGACACT GCATCAGGTC GGCCACAGTC TGGTAGTCAT
  ACAGAGGCAA TGCAAGGGAG AGCAGTGTAC TGAATATAAC CATGAATACC ACGAGCCAAG
  Y
  GATATCACAG CAACAAGCAT TTACACAGCA TCTCTCAGTT TTCTTACCTG CTCTTGATAG
  TTAGTTGTTC AACACACACA CACACACACA CACACACACA CACACACACA CACACTTGTA
  TTTTTATTTT AAAGCAAACC AAGAGGATCT TTTACATTAG GAAAACATAC TACTAGAGAC
  AGCTATATCA GGGTCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51105432	NES13868560	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36780102					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51105432	NES13868560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49422110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D5Mit299	DNA segment, Chr 5, Massachusetts Institute of Technology 299			33 bp proximal
Gm73321	predicted gene, 73321			within coordinates
Kcnip4	Kv channel interacting protein 4			Intron
				mRNA-UTR