rs36779339 SNP Detail

Summary

• ID
  rs36779339
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGACATG AAGATTTGCT
  GGCTGGAGGT CTTAGCTGAA TCCAGGAGCT GTAGGTTAGG TTAGACACCG TTTCTCAAAA
  TCAAAGATGG GGAGCCACCT TCAGCCTCCA CACACTTGTG AATGTACACG TACAGACAGA
  CAGCACATAC GTGCACATGA TCTTAGATAT GTATGCTTCT GTTCTGATGA TAAATAGATT
  M
  CTTACTGAGC TACAGAACTT CAAGGCCTTG AAAGAATTAC AGGCAGGAGT TACACAACTT
  ACAAAATGAC TGGCAATACA ACTGAGAACA TGATGGAGCA GAGGGCTCAC TTTCTCCCGC
  CTCTATTTTC TTTTTCTTTT CGTCGTCGTC GTCGTCGTCG TCTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51649250	NES14653796	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36779339					SNP	A	A	A	A	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649250	NES14653796	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369444 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1173 bp distal
Rr585760	regulatory region 585760	1725 bp proximal
Tssr35804	transcription start site region 35804	370 bp upstream
Tssr35805	transcription start site region 35805	1399 bp downstream
Tssr35806	transcription start site region 35806	1410 bp downstream
Tssr35807	transcription start site region 35807	1430 bp downstream
Tssr35808	transcription start site region 35808	1471 bp downstream
Tssr35809	transcription start site region 35809	1508 bp downstream
Tssr35810	transcription start site region 35810	1533 bp downstream
Tssr35811	transcription start site region 35811	1600 bp downstream
Tssr35812	transcription start site region 35812	1619 bp downstream
Tssr35813	transcription start site region 35813	1660 bp downstream
Tssr35814	transcription start site region 35814	1684 bp downstream
Tssr35815	transcription start site region 35815	1715 bp downstream
Tssr35816	transcription start site region 35816	1732 bp downstream
Tssr35817	transcription start site region 35817	1802 bp downstream
Tssr35818	transcription start site region 35818	1830 bp downstream
Tssr35819	transcription start site region 35819	1862 bp downstream