rs36778047 SNP Detail

Summary

• ID
  rs36778047
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66306795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTATCT CAGAGTATAT
  TTTGCAATTC CAGTTTATCA ATCAACCAAC ACCTCCGCCC ACCCCAATCC ACCTGTGGAC
  CAAACTCAGG GCACTGCACC TGCTAGGCAC GATCTCTACA CTAAGGTGAA CCCCCATCCT
  CTTCAACTAA AGATCTTTTA TTAATGAAAA CCTCAAAAAC TATATATCCA TACACATCTA
  K
  TCACCTTGAA ATTTCTAGTA GCAAACCCCC AAACACTCGT GCTTCCTACT CAATCATGTC
  TCAGAAGATT TGACCCTTTA TACATTTTCT GATGTCAGTG CTTTTAGAAC CCTTGATGAC
  GTTTGAACCT TAAACACAGT GTAAAGATGA ATCAGTGAGT CAGACTTAAG TTCTAGGCAA
  GTGTATAAGA AAAATAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50970350	NES13937378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36778047					SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970350	NES13937378	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66306795 () rs orientation: forward

Symbol	Name	Function Class
Gm35236	predicted gene, 35236	1815 bp upstream
Rr777	regulatory region 777	within coordinates
Rr2055	regulatory region 2055	805 bp proximal
Rr577824	regulatory region 577824	1621 bp distal
Rr577825	regulatory region 577825	270 bp distal
Rr577826	regulatory region 577826	428 bp distal
Rr577827	regulatory region 577827	1325 bp proximal
Rr577828	regulatory region 577828	1826 bp proximal
Tssr29427	transcription start site region 29427	1773 bp upstream