rs36777824 SNP Detail

Summary

• ID
  rs36777824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26325970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAACTA ATCATCACCT
  TGAAAGCTTC TAGAACTACA GTTCACTGTG TCTGTTCAAA GACCACCTTA TTAATTAACT
  CTTTGCTTGG ATTATTGCTA TAAATGTTAT GAGGTGGTTC AATGAAAAAT TTGAATTTAT
  GGAAGCTGAT TGTAAATGTT AGGAAATACC ACAGATTTGG CATTAAGTAG TAGATGCCTC
  M
  ATCACGCCAC TGCTGGGAAG GCTTAAGAGA TTCCTATATA TCTTCATTAG TATCAGATCC
  CTTCTCTGTA AATTTGAGAG TGAGAAAGCT AATTTGTGGT TTACCAAACA AAATAGAGAT
  AATGTATATA GCATGCTTAT CTACTGTATG CCTTTAGCAA ATGGAATATA TTGTGATTAT
  TTATTAAATT AAACAATGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51445348	NES14436693	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36777824					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51445348	NES14436693	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26325970 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574313	regulatory region 574313	408 bp distal