rs36777730 SNP Detail

Summary

• ID
  rs36777730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90604970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGTCTGA TGGTGGCATT
  TCCTCAGCTG AGGTTCCTGC CTTAGTTACT GTTCTGCTGC TGTGAAAAGC CACCACAACC
  AAGAGAAAGC ATTTACTTGG GGCTTGTAGC CTCTTTTCTC AGGTACAGTG TGTGTGCCAC
  CCTCCAGCTC GCTCTCTTTT GGGTACCATG GATGTGCTGC CCATTCTATG ACTGTCCAGT
  Y
  ATTTCAGAGG CTCAGTCCAT GATCATCATG GCAGGAAGCA TGGTGGCACA CAGGCAGCCA
  TGGTGCTGGA GAAGCCGCTG AGAGCTACAT CCTGATCTGC AGGCAGAGAG AGAGAACTGG
  GCCTGGCGTG GGCTTTGAAA ACCTCAAAGC CCACCACCCC CAGTGGCTCT ACCTCCTCCA
  ACAAGGTCTC CTAATCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51361603	NES13741349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36777730					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361603	NES13741349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90604970 () rs orientation: forward

Symbol	Name	Function Class
Rr634261	regulatory region 634261	1549 bp proximal
Rr634262	regulatory region 634262	1845 bp proximal
Slc41a3	solute carrier family 41, member 3	Intron