rs36774979 SNP Detail

Summary

• ID
  rs36774979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTGATT CTGGTTTTTC
  TCCCTGACTT ATCATTTTCT CCCTCTCCCC ATCCCCCCCC CACCCCCTTT CTGTTTTAAT
  AGCCAGAGTA AATGTAGGCG ATTTCCCCTT TCCTGGGGCT TCTAAAACTG TCTTCCCAAA
  TTGTTCCGAC CGTCATTTCA GGGCAGCTGA GTTCTCGGGC ATTCTGGAAC AGCAAGCCTG
  R
  GGACTATGTC ACATGATTGT TTAATCTTGG GGAGTCCCAG GGGAGCACCA GGCACATGCT
  GTTACTGAAA CAGGACATAG GCTAAACAAG ACAGAGCTGA AAAATGGAAG AAAGAAGTCT
  CCATGACGTG TCCCTTCCCG TGGCTCACCT CACTGAGTTA ACCCACCGTG CGGTTTGCCC
  TAATCACAGC GCGCTGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50810550	NES14204856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	G	G		G		G	G	G		G
ss146766633	ENSMUSSNP3574209	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G				G
ss323245275	CHEV_10_8482702	CHEVERUD	SCREENING_POP	f	SNP									A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36774979					SNP	A	A	A	A	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810550	NES14204856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638668 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	1454 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	600 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	508 bp upstream
Tssr96640	transcription start site region 96640	645 bp upstream
Tssr96641	transcription start site region 96641	621 bp upstream
Tssr96642	transcription start site region 96642	590 bp upstream
Tssr96643	transcription start site region 96643	534 bp upstream
Tssr96644	transcription start site region 96644	438 bp upstream
Tssr96645	transcription start site region 96645	288 bp upstream