rs36774887 SNP Detail

Summary

• ID
  rs36774887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108449423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCACTA GTCTAGAAGG
  GAGTATAAAG AGAAGGAGAG AAAAATAAAC CTGCCAAGTC CCGCTGAGTA CTGAATATGA
  ACCAGGTGTA CGTTAGCCAT CTTTCTGTTG CAGTAATAAA TACCTGAGGT ATATAAACCA
  AGGACCAGGG AATTTCTGTC TGAGTTCAGA CTAATTGAGG TTTCAGTCTA GTTGCTTTGG
  R
  ACCCACCTTG GAGCAGCACA TACCTACTAG AGCAGAGAGC AGAGGGTAAA ACTGTTCACC
  TCACGGCAGA GAATCAGAAG AAACCAGAAC AGACAATGTC CCACAATCCC TTTAGGGAAA
  CACCCCTCCT ACTAACTTAT GACCTCCCAC CAAGTCCCAC CTCTTAAAGG TTCTATTCAT
  TCCCATACCA CTAAAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51813740	NES14768611	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36774887					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813740	NES14768611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108449423 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	247 bp distal
Rr636116	regulatory region 636116	70 bp proximal
Rr636117	regulatory region 636117	353 bp proximal
Tssr58061	transcription start site region 58061	571 bp upstream
Tssr58062	transcription start site region 58062	605 bp upstream
Tssr58063	transcription start site region 58063	622 bp upstream
Tssr58064	transcription start site region 58064	653 bp upstream
Tssr62385	transcription start site region 62385	798 bp upstream
Tssr62386	transcription start site region 62386	74 bp downstream