rs36766246 SNP Detail

Summary

• ID
  rs36766246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72575157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGATAA CGTCGGTGTG
  AGGCTGCCAG TCCTGGGCTG ACACAGGTTT AGGAGAGCTC CTGTGCAGGT CTCAACAAGG
  TCTCAACTCA GATACCCAGA CAGAGGCTGT GTGGGCACAG AAACTTTGTC ACTGCTTGGA
  AGAGGAGAGG GGAGGAAAGC AATGAACTGC CTCCGAGGTT CCAGCGAATC CAACACGGAA
  M
  AGGCACCAGA ACCCAGGTCT TCTCTGCCTC CCAGACAGGA TCTCTCTCAG ACCTGCAACT
  TTCATCCTTG TTGTGGTCCC GCGGTGACCA TTTCCACCAG ACATCGTCCT CCTCACCCTC
  ACCTCCCTCA CCAGACCCCT TGCTCACCGG ACGCGTCCCC AGCGTTCCGG TAAGGGGGGG
  ATCCCACATC CCCCTTTTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695541	NES14820319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36766246					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695541	NES14820319	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72575157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17548	CpG island 17548			within coordinates
Elmod3	ELMO/CED-12 domain containing 3			Intron
				mRNA-UTR
Retsat	retinol saturase (all trans retinol 13,14 reductase)			428 bp upstream
Rr399707	regulatory region 399707			155 bp upstream
Rr632239	regulatory region 632239			within coordinates
Rr632240	regulatory region 632240			158 bp proximal
Tssr57150	transcription start site region 57150			420 bp upstream
Tssr61470	transcription start site region 61470			156 bp downstream
Tssr61471	transcription start site region 61471			207 bp downstream